Visualization
knowledgecomplex.viz — NetworkX export and visualization helpers.
Two complementary views of a knowledge complex are provided:
Hasse diagram (plot_hasse, plot_hasse_star, plot_hasse_skeleton)
Every element (vertex, edge, face) becomes a graph node. Directed edges
represent the boundary operator, pointing from each element to its boundary
elements (higher dimension → lower dimension). Faces have out-degree 3
and in-degree 0; edges have out-degree 2; vertices have out-degree 0.
Nodes are colored by type and sized by dimension.
Geometric realization (plot_geometric, plot_geometric_interactive)
Only KC vertices become points in 3D space. KC edges become line segments
connecting their two boundary vertices. KC faces become filled,
semi-transparent triangular patches spanning their three boundary vertices.
This is the classical geometric realization of the abstract simplicial
complex — the view a topologist would draw.
to_networkx exports a DiGraph that backs the Hasse plots.
verify_networkx validates that a DiGraph satisfies simplicial complex
cardinality and closure invariants at runtime.
Requires optional dependencies::
pip install knowledgecomplex[viz] # matplotlib + networkx
pip install knowledgecomplex[viz-interactive] # + plotly for interactive 3D
to_networkx(kc)
Convert a KnowledgeComplex to a directed networkx DiGraph.
Every element (vertex, edge, face) becomes a node. Directed edges
represent the boundary operator kc:boundedBy, pointing from each
element to its boundary elements (higher dimension → lower dimension).
In the resulting DiGraph:
- Face nodes have out-degree 3 (→ 3 boundary edges) and in-degree 0.
- Edge nodes have out-degree 2 (→ 2 boundary vertices).
- Vertex nodes have out-degree 0 (empty boundary).
Each node carries attributes:
type: element type name (e.g."Node","Link")kind:"vertex","edge", or"face"dim: 0, 1, or 2uri: file URI if present, elseNone- All model-namespace attributes from the element
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
kc
|
KnowledgeComplex
|
|
required |
Returns:
| Type | Description |
|---|---|
DiGraph
|
|
Source code in knowledgecomplex/viz.py
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verify_networkx(G)
Validate that a DiGraph satisfies simplicial complex invariants.
Checks cardinality constraints and boundary closure:
- Every node has
kindanddimattributes. - Vertices (dim=0): out-degree = 0.
- Edges (dim=1): out-degree = 2, both targets are vertices (dim=0).
- Faces (dim=2): out-degree = 3, all targets are edges (dim=1).
- Closed-triangle: for each face, the 3 boundary edges share exactly 3 distinct vertices (forming a closed triangle, not an open fan).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
G
|
DiGraph
|
A DiGraph produced by :func: |
required |
Returns:
| Type | Description |
|---|---|
bool
|
|
Raises:
| Type | Description |
|---|---|
ValueError
|
On the first invariant violation, with a descriptive message. |
TypeError
|
If G is not a |
Source code in knowledgecomplex/viz.py
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type_color_map(kc)
Build a type-name to hex-color mapping from the schema's type registry.
Uses matplotlib's tab10 colormap (or tab20 if > 10 types)
for distinct, visually separable colors.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
kc
|
KnowledgeComplex
|
|
required |
Returns:
| Type | Description |
|---|---|
dict[str, str]
|
Mapping from type name to hex color string. |
Source code in knowledgecomplex/viz.py
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plot_hasse(kc, *, ax=None, figsize=(10, 8), with_labels=True, node_size_by_dim=True)
Plot the Hasse diagram of the complex with type-based color coding.
Every element (vertex, edge, face) is drawn as a node. Directed arrows represent the boundary operator, pointing from each element to its boundary elements (higher dimension → lower dimension). Nodes are colored by type and sized by dimension (vertices largest, faces smallest).
This is not a geometric picture of the complex — it is the partially
ordered set of simplices. For a geometric view where vertices are points,
edges are line segments, and faces are filled triangles, see
:func:plot_geometric.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
kc
|
KnowledgeComplex
|
|
required |
ax
|
matplotlib Axes
|
Axes to draw on. Created if not provided. |
None
|
figsize
|
tuple
|
Figure size if creating a new figure. |
(10, 8)
|
with_labels
|
bool
|
Show element ID labels on nodes. |
True
|
node_size_by_dim
|
bool
|
Scale node size by dimension (vertex=large, face=small). |
True
|
Returns:
| Type | Description |
|---|---|
(fig, ax)
|
The matplotlib Figure and Axes. |
Source code in knowledgecomplex/viz.py
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plot_hasse_star(kc, id, *, ax=None, figsize=(10, 8), with_labels=True)
Plot the Hasse diagram with the star of an element highlighted.
Elements in St(id) are drawn in full color with directed arrows;
all other elements are dimmed to light gray. This is the Hasse-diagram
view — see :func:plot_hasse for details on what that means.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
kc
|
KnowledgeComplex
|
|
required |
id
|
str
|
Element whose star to highlight. |
required |
ax
|
matplotlib Axes
|
|
None
|
figsize
|
tuple
|
|
(10, 8)
|
with_labels
|
bool
|
|
True
|
Returns:
| Type | Description |
|---|---|
(fig, ax)
|
|
Source code in knowledgecomplex/viz.py
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plot_hasse_skeleton(kc, k, *, ax=None, figsize=(10, 8), with_labels=True)
Plot the Hasse diagram of the k-skeleton only.
Shows only elements of dimension ≤ k, with directed boundary arrows.
This is the Hasse-diagram view — see :func:plot_hasse for details.
k=0: vertices only, k=1: vertices + edges, k=2: everything.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
kc
|
KnowledgeComplex
|
|
required |
k
|
int
|
Maximum dimension (0, 1, or 2). |
required |
ax
|
matplotlib Axes
|
|
None
|
figsize
|
tuple
|
|
(10, 8)
|
with_labels
|
bool
|
|
True
|
Returns:
| Type | Description |
|---|---|
(fig, ax)
|
|
Source code in knowledgecomplex/viz.py
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plot_complex(kc, **kwargs)
Deprecated: use :func:plot_hasse instead.
Source code in knowledgecomplex/viz.py
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plot_star(kc, id, **kwargs)
Deprecated: use :func:plot_hasse_star instead.
Source code in knowledgecomplex/viz.py
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plot_skeleton(kc, k, **kwargs)
Deprecated: use :func:plot_hasse_skeleton instead.
Source code in knowledgecomplex/viz.py
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plot_geometric(kc, *, ax=None, figsize=(10, 8), with_labels=True)
Plot the geometric realization of the complex in 3D.
KC vertices become points in 3D space (positioned by force-directed layout). KC edges become line segments connecting their two boundary vertices. KC faces become filled, semi-transparent triangular patches spanning their three boundary vertices.
This is the classical geometric realization — the view a topologist
would draw. For the Hasse diagram where every element is a node and
boundary relations are directed edges, see :func:plot_hasse.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
kc
|
KnowledgeComplex
|
|
required |
ax
|
matplotlib Axes3D
|
A 3D axes to draw on. Created if not provided. |
None
|
figsize
|
tuple
|
Figure size if creating a new figure. |
(10, 8)
|
with_labels
|
bool
|
Show vertex ID labels. |
True
|
Returns:
| Type | Description |
|---|---|
(fig, ax)
|
The matplotlib Figure and Axes3D. |
Source code in knowledgecomplex/viz.py
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plot_geometric_interactive(kc)
Plot an interactive 3D geometric realization of the complex.
Same geometry as :func:plot_geometric — KC vertices are points, KC edges
are line segments, KC faces are filled triangles — but rendered with
Plotly for interactive rotation, zoom, and hover inspection.
Requires plotly::
pip install knowledgecomplex[viz-interactive]
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
kc
|
KnowledgeComplex
|
|
required |
Returns:
| Type | Description |
|---|---|
Figure
|
Call |
Source code in knowledgecomplex/viz.py
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